IL_5TGM_113

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCG*CAGG

Length

7 nucleotides

Bulged bases

5TGM|1|1|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_113 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.2115

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5TGM|1|1|C|2959
5TGM|1|1|C|2960
5TGM|1|1|G|2961
*
5TGM|1|1|C|2970
5TGM|1|1|A|2971
5TGM|1|1|G|2972
5TGM|1|1|G|2973

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain P

Peptidyl-tRNA analog ACCA-Leu-Phe