IL_5TGM_162

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUACAG*UUGUAAUU

Length

15 nucleotides

Bulged bases

5TGM|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|G|480
5TGM|1|2|A|481
5TGM|1|2|U|482
5TGM|1|2|A|483
5TGM|1|2|C|484
5TGM|1|2|A|485
5TGM|1|2|G|486
*
5TGM|1|2|U|501
5TGM|1|2|U|502
5TGM|1|2|G|503
5TGM|1|2|U|504
5TGM|1|2|A|505
5TGM|1|2|A|506
5TGM|1|2|U|507
5TGM|1|2|U|508

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A