IL_5TGM_165

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5TGM|1|2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_165 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.2991

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5TGM|1|2|G|557
5TGM|1|2|U|558
5TGM|1|2|C|559
*
5TGM|1|2|G|586
5TGM|1|2|C|587

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S3

40S ribosomal protein S3

Chain SM

Ribosome-bound protein Stm1,Suppressor protein STM1,Ribosome-bound protein Stm1