IL_5TGM_166

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUGCCAG*CGGUAAUUCC

Length

18 nucleotides

Bulged bases

5TGM|1|2|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|G|561
5TGM|1|2|G|562
5TGM|1|2|U|563
5TGM|1|2|G|564
5TGM|1|2|C|565
5TGM|1|2|C|566
5TGM|1|2|A|567
5TGM|1|2|G|568
*
5TGM|1|2|C|575
5TGM|1|2|G|576
5TGM|1|2|G|577
5TGM|1|2|U|578
5TGM|1|2|A|579
5TGM|1|2|A|580
5TGM|1|2|U|581
5TGM|1|2|U|582
5TGM|1|2|C|583
5TGM|1|2|C|584

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S3

40S ribosomal protein S3

Chain SM

Ribosome-bound protein Stm1,Suppressor protein STM1,Ribosome-bound protein Stm1