IL_5TGM_173

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|G|734
5TGM|1|2|A|735
5TGM|1|2|A|736
5TGM|1|2|A|737
5TGM|1|2|A|738
5TGM|1|2|A|739
5TGM|1|2|A|740
5TGM|1|2|U|741
5TGM|1|2|U|742
5TGM|1|2|A|743
*
5TGM|1|2|U|773
5TGM|1|2|A|774
5TGM|1|2|U|775
5TGM|1|2|A|776
5TGM|1|2|U|777
5TGM|1|2|U|778
5TGM|1|2|A|779
5TGM|1|2|G|780
5TGM|1|2|C|781

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S Ribosomal Protein S11

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A