IL_5TGM_174

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_174 not in the Motif Atlas

Geometric match to IL_6CZR_167

Geometric discrepancy: 0.3913

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5TGM|1|2|A|800
5TGM|1|2|C|801
5TGM|1|2|G|802
5TGM|1|2|U|803
5TGM|1|2|U|804
5TGM|1|2|U|805
*
5TGM|1|2|A|833
5TGM|1|2|U|834
5TGM|1|2|C|835
5TGM|1|2|G|836
5TGM|1|2|U|837

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A