IL_5TGM_182

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5TGM|1|2|G|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_182 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3642

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5TGM|1|2|U|876
5TGM|1|2|U|877
5TGM|1|2|G|878
5TGM|1|2|U|879
5TGM|1|2|C|880
5TGM|1|2|A|881
5TGM|1|2|G|882
*
5TGM|1|2|C|893
5TGM|1|2|U|894
5TGM|1|2|U|895
5TGM|1|2|G|896
5TGM|1|2|G|897
5TGM|1|2|A|898
5TGM|1|2|U|899
5TGM|1|2|U|900
5TGM|1|2|U|901
5TGM|1|2|A|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain S1

40S ribosomal protein S1-A