IL_5TGM_193

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_193 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.1801

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5TGM|1|2|G|1161
5TGM|1|2|G|1162
*
5TGM|1|2|C|1442
5TGM|1|2|A|1443
5TGM|1|2|C|1444

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C5

40S Ribosomal Protein S15,40S ribosomal protein S15,40S Ribosomal Protein S15

Chain C8

40S ribosomal protein S18-A

Chain SM

Ribosome-bound protein Stm1,Suppressor protein STM1,Ribosome-bound protein Stm1