IL_5TGM_204

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

5TGM|1|2|U|1323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_204 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1422

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5TGM|1|2|C|1322
5TGM|1|2|U|1323
5TGM|1|2|A|1324
5TGM|1|2|C|1325
*
5TGM|1|2|G|1366
5TGM|1|2|A|1367
5TGM|1|2|G|1368

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C7

ES17

Chain D0

40S ribosomal protein S20

Chain SR

Guanine nucleotide-binding protein subunit beta-like protein