IL_5TGM_205

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAUAG*CUUCUUAG

Length

16 nucleotides

Bulged bases

5TGM|1|2|A|1329, 5TGM|1|2|U|1330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|C|1325
5TGM|1|2|U|1326
5TGM|1|2|A|1327
5TGM|1|2|A|1328
5TGM|1|2|A|1329
5TGM|1|2|U|1330
5TGM|1|2|A|1331
5TGM|1|2|G|1332
*
5TGM|1|2|C|1359
5TGM|1|2|U|1360
5TGM|1|2|U|1361
5TGM|1|2|C|1362
5TGM|1|2|U|1363
5TGM|1|2|U|1364
5TGM|1|2|A|1365
5TGM|1|2|G|1366

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20

Chain SR

Guanine nucleotide-binding protein subunit beta-like protein