IL_5TGM_257

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

5TGM|1|5|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_257 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.1025

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5TGM|1|5|C|752
5TGM|1|5|C|753
*
5TGM|1|5|G|779
5TGM|1|5|A|780
5TGM|1|5|G|781

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m8

60S ribosomal protein L18-A

Chain n8

60S ribosomal protein L28

Chain n9

60S ribosomal protein L29