IL_5TGM_277

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUCCG*UGACC

Length

12 nucleotides

Bulged bases

5TGM|1|5|C|1016, 5TGM|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|5|G|1012
5TGM|1|5|G|1013
5TGM|1|5|U|1014
5TGM|1|5|U|1015
5TGM|1|5|C|1016
5TGM|1|5|C|1017
5TGM|1|5|G|1018
*
5TGM|1|5|U|1034
5TGM|1|5|G|1035
5TGM|1|5|A|1036
5TGM|1|5|C|1037
5TGM|1|5|C|1038

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1,Ribosome-bound protein Stm1