IL_5TGM_376

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUAUUUG*CAUUCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|6|U|117
5TGM|1|6|U|118
5TGM|1|6|A|119
5TGM|1|6|U|120
5TGM|1|6|U|121
5TGM|1|6|U|122
5TGM|1|6|G|123
*
5TGM|1|6|C|294
5TGM|1|6|A|295
5TGM|1|6|U|296
5TGM|1|6|U|297
5TGM|1|6|C|298
5TGM|1|6|A|299

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8