IL_5TGM_386

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_386 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.1125

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

5TGM|1|6|U|318
5TGM|1|6|U|319
5TGM|1|6|U|320
5TGM|1|6|C|321
5TGM|1|6|G|322
5TGM|1|6|A|323
*
5TGM|1|6|U|345
5TGM|1|6|G|346

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain c1

40S ribosomal protein S11-A,40S Ribosomal Protein S11

Chain s8

40S ribosomal protein S8