IL_5TGM_402

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGGC*GAUUUCCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|6|U|649
5TGM|1|6|U|650
5TGM|1|6|G|651
5TGM|1|6|G|652
5TGM|1|6|C|653
*
5TGM|1|6|G|677
5TGM|1|6|A|678
5TGM|1|6|U|679
5TGM|1|6|U|680
5TGM|1|6|U|681
5TGM|1|6|C|682
5TGM|1|6|C|683
5TGM|1|6|A|684
5TGM|1|6|A|685

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d2

40S ribosomal protein S22-A

Chain s9

40S ribosomal protein S9-A