IL_5TGM_422

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

5TGM|1|6|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_422 not in the Motif Atlas

Homologous match to IL_8P9A_429

Geometric discrepancy: 0.1345

The information below is about IL_8P9A_429

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5TGM|1|6|G|1146
5TGM|1|6|A|1147
*
5TGM|1|6|U|1630
5TGM|1|6|A|1631
5TGM|1|6|C|1632

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d6

40S ribosomal protein S26-B

Chain s2

40S ribosomal protein S2