IL_5TGM_437

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

5TGM|1|6|U|1370, 5TGM|1|6|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_437 not in the Motif Atlas

Homologous match to IL_8P9A_446

Geometric discrepancy: 0.2216

The information below is about IL_8P9A_446

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|6|G|1352
5TGM|1|6|U|1353
5TGM|1|6|G|1354
5TGM|1|6|C|1355
*
5TGM|1|6|G|1368
5TGM|1|6|U|1369
5TGM|1|6|U|1370
5TGM|1|6|A|1371
5TGM|1|6|U|1372
5TGM|1|6|C|1373

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A