IL_5TGM_458

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CA*UUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_458 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.2451

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5TGM|1|7|C|26
5TGM|1|7|A|27
*
5TGM|1|7|U|53
5TGM|1|7|U|54
5TGM|1|7|A|55
5TGM|1|7|A|56
5TGM|1|7|G|57

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain m1

60S ribosomal protein L11-B