IL_5TGM_486

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUUG*UAGAG

Length

11 nucleotides

Bulged bases

5TGM|1|2|U|1640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|C|1636
5TGM|1|2|G|1637
5TGM|1|2|A|1638
5TGM|1|2|U|1639
5TGM|1|2|U|1640
5TGM|1|2|G|1641
*
5TGM|1|2|U|1726
5TGM|1|2|A|1727
5TGM|1|2|G|1728
5TGM|1|2|A|1729
5TGM|1|2|G|1730

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain D3

40S ribosomal protein S23-A

Chain N3

60S ribosomal protein L23-A

Chain Q1

60S ribosomal protein L41-A