IL_5TGM_498

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCAAAGU*AACCAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|5|G|2210
5TGM|1|5|U|2211
5TGM|1|5|C|2212
5TGM|1|5|A|2213
5TGM|1|5|A|2214
5TGM|1|5|A|2215
5TGM|1|5|G|2216
5TGM|1|5|U|2217
*
5TGM|1|5|A|2228
5TGM|1|5|A|2229
5TGM|1|5|C|2230
5TGM|1|5|C|2231
5TGM|1|5|A|2232
5TGM|1|5|A|2233
5TGM|1|5|G|2234
5TGM|1|5|C|2235

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o6

60S ribosomal protein L36-A

Chain q2

60S ribosomal protein L42-A