IL_5TGM_533

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_533 not in the Motif Atlas

Homologous match to IL_8CRE_465

Geometric discrepancy: 0.1155

The information below is about IL_8CRE_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5TGM|1|2|G|1523
5TGM|1|2|G|1524
5TGM|1|2|G|1525
5TGM|1|2|A|1526
5TGM|1|2|U|1527
5TGM|1|2|A|1528
*
5TGM|1|2|U|1549
5TGM|1|2|U|1550
5TGM|1|2|C|1551
5TGM|1|2|A|1552
5TGM|1|2|A|1553
5TGM|1|2|C|1554

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A