IL_5TGM_536

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*UCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_536 not in the Motif Atlas

Geometric match to IL_9DFE_091

Geometric discrepancy: 0.3353

The information below is about IL_9DFE_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

5TGM|1|5|G|171
5TGM|1|5|G|172
*
5TGM|1|5|U|246
5TGM|1|5|C|247
5TGM|1|5|U|248

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A