IL_5TGM_540
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_540 not in the Motif Atlas
- Homologous match to IL_8CRE_110
- Geometric discrepancy: 0.2115
- The information below is about IL_8CRE_110
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_79895.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5TGM|1|5|G|2770
5TGM|1|5|U|2771
5TGM|1|5|C|2772
5TGM|1|5|C|2773
*
5TGM|1|5|G|2787
5TGM|1|5|C|2788
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m3
- 60S ribosomal protein L13-A
- Chain m8
- 60S ribosomal protein L18-A
- Chain n8
- 60S ribosomal protein L28
- Chain q2
- 60S ribosomal protein L42-A
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