IL_5U31_002

3D structure

PDB id

5U31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of AacC2c1-sgRNA-8mer substrate DNA ternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CU*AGG

Length

5 nucleotides

Bulged bases

5U31|1|B|G|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U31_002 not in the Motif Atlas

Geometric match to IL_5U30_002

Geometric discrepancy: 0.0809

The information below is about IL_5U30_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

5U31|1|B|C|3
5U31|1|B|U|4
*
5U31|1|B|A|7
5U31|1|B|G|8
5U31|1|B|G|9

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease C2c1