IL_5U31_003
3D structure
- PDB id
- 5U31 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of AacC2c1-sgRNA-8mer substrate DNA ternary complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- GUGUGCCAAUGG*CAAAGC
- Length
- 18 nucleotides
- Bulged bases
- 5U31|1|B|A|34, 5U31|1|B|U|36
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U31_003 not in the Motif Atlas
- Geometric match to IL_5U30_003
- Geometric discrepancy: 0.0429
- The information below is about IL_5U30_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89055.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
5U31|1|B|G|27
5U31|1|B|U|28
5U31|1|B|G|29
5U31|1|B|U|30
5U31|1|B|G|31
5U31|1|B|C|32
5U31|1|B|C|33
5U31|1|B|A|34
5U31|1|B|A|35
5U31|1|B|U|36
5U31|1|B|G|37
5U31|1|B|G|38
*
5U31|1|B|C|54
5U31|1|B|A|55
5U31|1|B|A|56
5U31|1|B|A|57
5U31|1|B|G|58
5U31|1|B|C|59
Current chains
- Chain B
- sgRNA
Nearby chains
- Chain A
- CRISPR-associated endonuclease C2c1
Coloring options: