IL_5U33_004
3D structure
- PDB id
- 5U33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of AacC2c1-sgRNA-extended non-target DNA ternary complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- UGUGCCAAUGG*CAAAG
- Length
- 16 nucleotides
- Bulged bases
- 5U33|1|B|A|34, 5U33|1|B|U|36
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U33_004 not in the Motif Atlas
- Geometric match to IL_5U30_004
- Geometric discrepancy: 0.0582
- The information below is about IL_5U30_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64403.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L-R
- Number of instances in this motif group
- 1
Unit IDs
5U33|1|B|U|28
5U33|1|B|G|29
5U33|1|B|U|30
5U33|1|B|G|31
5U33|1|B|C|32
5U33|1|B|C|33
5U33|1|B|A|34
5U33|1|B|A|35
5U33|1|B|U|36
5U33|1|B|G|37
5U33|1|B|G|38
*
5U33|1|B|C|54
5U33|1|B|A|55
5U33|1|B|A|56
5U33|1|B|A|57
5U33|1|B|G|58
Current chains
- Chain B
- sgRNA
Nearby chains
- Chain A
- CRISPR-associated endonuclease C2c1
Coloring options: