IL_5U3G_001

3D structure

PDB id

5U3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Dickeya dadantii ykkC riboswitch bound to guanidinium

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUAG*CGAGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_21200.1

Basepair signature

cWW-tSH-tHW-L-cWW-L

Number of instances in this motif group

6

Unit IDs

5U3G|1|B|C|6
5U3G|1|B|U|7
5U3G|1|B|A|8
5U3G|1|B|G|9
*
5U3G|1|B|C|30
5U3G|1|B|G|31
5U3G|1|B|A|32
5U3G|1|B|G|33
5U3G|1|B|A|34
5U3G|1|B|G|35

Current chains

Chain B

ykkC riboswitch

Nearby chains