3D structure

PDB id
5U4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U4J_003 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.0942
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

5U4J|1|a|C|504
5U4J|1|a|G|505
5U4J|1|a|G|506
5U4J|1|a|C|507
5U4J|1|a|U|508
5U4J|1|a|A|509
5U4J|1|a|A|510
5U4J|1|a|C|511
*
5U4J|1|a|G|540
5U4J|1|a|G|541

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12
Chain w
Alternative ribosome-rescue factor A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1431 s