IL_5U9F_004
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 5U9F|1|01|U|100, 5U9F|1|01|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.4268
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
5U9F|1|01|G|81
5U9F|1|01|U|82
5U9F|1|01|A|83
5U9F|1|01|A|84
5U9F|1|01|G|85
*
5U9F|1|01|C|97
5U9F|1|01|G|98
5U9F|1|01|U|99
5U9F|1|01|U|100
5U9F|1|01|A|101
5U9F|1|01|U|102
5U9F|1|01|A|103
5U9F|1|01|A|104
5U9F|1|01|C|105
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 23
- 50S ribosomal protein L24
- Chain 27
- 50S ribosomal protein L29
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