IL_5U9F_008

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_008 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.2338

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5U9F|1|01|C|269
5U9F|1|01|A|270
5U9F|1|01|G|271
*
5U9F|1|01|C|366
5U9F|1|01|G|367
5U9F|1|01|A|368
5U9F|1|01|U|369
5U9F|1|01|G|370

Current chains

Chain 01

23S ribosomal RNA

Nearby chains