IL_5U9F_029

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_029 not in the Motif Atlas

Homologous match to IL_5J7L_273

Geometric discrepancy: 0.119

The information below is about IL_5J7L_273

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5U9F|1|01|U|870
5U9F|1|01|U|871
5U9F|1|01|U|872
*
5U9F|1|01|A|905
5U9F|1|01|U|906
5U9F|1|01|G|907

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L16