3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
5U9F|1|01|A|1127
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_037 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0932
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5U9F|1|01|G|1024
5U9F|1|01|G|1025
5U9F|1|01|G|1026
5U9F|1|01|A|1027
5U9F|1|01|A|1028
5U9F|1|01|A|1029
5U9F|1|01|C|1030
*
5U9F|1|01|G|1124
5U9F|1|01|G|1125
5U9F|1|01|A|1126
5U9F|1|01|A|1127
5U9F|1|01|G|1128
5U9F|1|01|A|1129
5U9F|1|01|U|1130
5U9F|1|01|G|1131
5U9F|1|01|U|1132
5U9F|1|01|A|1133
5U9F|1|01|A|1134
5U9F|1|01|C|1135
5U9F|1|01|G|1136
5U9F|1|01|G|1137
5U9F|1|01|G|1138
5U9F|1|01|G|1139
5U9F|1|01|C|1140

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 02
5S ribosomal RNA; 5S rRNA
Chain 05
50S ribosomal protein L3
Chain 12
50S ribosomal protein L13
Chain 15
50S ribosomal protein L16
Chain 34
50S ribosomal protein L36

Coloring options:


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