IL_5U9F_043

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

5U9F|1|01|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_043 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1429

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

5U9F|1|01|C|1196
5U9F|1|01|G|1197
5U9F|1|01|U|1198
*
5U9F|1|01|A|1247
5U9F|1|01|G|1248
5U9F|1|01|U|1249
5U9F|1|01|G|1250

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 14

50S ribosomal protein L15

Chain 19

50S ribosomal protein L20