IL_5U9F_052

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_052 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1558

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5U9F|1|01|C|1417
5U9F|1|01|G|1418
5U9F|1|01|A|1419
5U9F|1|01|A|1420
5U9F|1|01|G|1421
*
5U9F|1|01|C|1577
5U9F|1|01|U|1578
5U9F|1|01|A|1579
5U9F|1|01|A|1580
5U9F|1|01|G|1581

Current chains

Chain 01

23S ribosomal RNA

Nearby chains