IL_5U9F_081

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_081 not in the Motif Atlas

Geometric match to IL_4KNQ_004

Geometric discrepancy: 0.15

The information below is about IL_4KNQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

5U9F|1|01|C|2103
5U9F|1|01|C|2104
5U9F|1|01|U|2105
*
5U9F|1|01|A|2184
5U9F|1|01|U|2185
5U9F|1|01|G|2186

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 03

50S ribosomal protein L1