IL_5U9F_084

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_084 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.1589

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5U9F|1|01|C|2350
5U9F|1|01|G|2351
5U9F|1|01|A|2352
5U9F|1|01|G|2353
*
5U9F|1|01|C|2364
5U9F|1|01|G|2365
5U9F|1|01|A|2366
5U9F|1|01|G|2367

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L27

Chain 33

50S ribosomal protein L35