3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AG*CCU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_086 not in the Motif Atlas
Homologous match to IL_4WF9_089
Geometric discrepancy: 0.2806
The information below is about IL_4WF9_089
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

5U9F|1|01|A|2453
5U9F|1|01|G|2454
*
5U9F|1|01|C|2498
5U9F|1|01|C|2499
5U9F|1|01|U|2500

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 05
50S ribosomal protein L3
Chain Z
Peptide chain release factor RF2

Coloring options:


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