IL_5U9F_087
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_087 not in the Motif Atlas
- Geometric match to IL_4WF9_090
- Geometric discrepancy: 0.0808
- The information below is about IL_4WF9_090
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.6
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 41
Unit IDs
5U9F|1|01|G|2454
5U9F|1|01|G|2455
*
5U9F|1|01|C|2496
5U9F|1|01|A|2497
5U9F|1|01|C|2498
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 15
- 50S ribosomal protein L16
- Chain Z
- Peptide chain release factor RF2
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