3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGA*UGG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_088 not in the Motif Atlas
Homologous match to IL_7RQB_093
Geometric discrepancy: 0.1179
The information below is about IL_7RQB_093
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_63450.2
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
8

Unit IDs

5U9F|1|01|C|2456
5U9F|1|01|U|2457
5U9F|1|01|G|2458
5U9F|1|01|A|2459
*
5U9F|1|01|U|2493
5U9F|1|01|G|2494
5U9F|1|01|G|2495

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L16
Chain Z
Peptide chain release factor RF2

Coloring options:


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