IL_5U9F_088
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGA*UGG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_088 not in the Motif Atlas
- Homologous match to IL_7RQB_093
- Geometric discrepancy: 0.1179
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
5U9F|1|01|C|2456
5U9F|1|01|U|2457
5U9F|1|01|G|2458
5U9F|1|01|A|2459
*
5U9F|1|01|U|2493
5U9F|1|01|G|2494
5U9F|1|01|G|2495
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L16
- Chain Z
- Peptide chain release factor RF2
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