IL_5U9F_090
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_090 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.1652
- The information below is about IL_5J7L_338
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5U9F|1|01|C|2466
5U9F|1|01|C|2467
5U9F|1|01|A|2468
5U9F|1|01|A|2469
5U9F|1|01|G|2470
*
5U9F|1|01|C|2480
5U9F|1|01|G|2481
5U9F|1|01|A|2482
5U9F|1|01|C|2483
5U9F|1|01|G|2484
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L16
- Chain 34
- 50S ribosomal protein L36
- Chain Z
- Peptide chain release factor RF2
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