IL_5U9F_092

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5U9F|1|01|G|2576, 5U9F|1|01|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_092 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.1202

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5U9F|1|01|C|2510
5U9F|1|01|U|2511
5U9F|1|01|C|2512
*
5U9F|1|01|G|2574
5U9F|1|01|C|2575
5U9F|1|01|G|2576
5U9F|1|01|A|2577
5U9F|1|01|G|2578

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 30

50S ribosomal protein L32

Chain Z

Peptide chain release factor RF2