3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_105 not in the Motif Atlas
Homologous match to IL_5J7L_354
Geometric discrepancy: 0.1453
The information below is about IL_5J7L_354
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_70411.2
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

5U9F|1|01|U|2847
5U9F|1|01|G|2848
5U9F|1|01|U|2849
5U9F|1|01|A|2850
5U9F|1|01|A|2851
5U9F|1|01|G|2852
*
5U9F|1|01|U|2865
5U9F|1|01|U|2866
5U9F|1|01|G|2867
5U9F|1|01|A|2868
5U9F|1|01|G|2869

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 16
50S ribosomal protein L17
Chain 18
50S ribosomal protein L19

Coloring options:


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