IL_5U9F_117

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAA*UUUGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_117 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3638

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5U9F|1|A|G|75
5U9F|1|A|G|76
5U9F|1|A|A|77
5U9F|1|A|A|78
*
5U9F|1|A|U|91
5U9F|1|A|U|92
5U9F|1|A|U|93
5U9F|1|A|G|94
5U9F|1|A|C|95

Current chains

Chain A

16S ribosomal RNA

Nearby chains