IL_5U9F_134

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5U9F|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_134 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1435

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5U9F|1|A|C|569
5U9F|1|A|G|570
5U9F|1|A|U|571
5U9F|1|A|A|572
5U9F|1|A|A|573
5U9F|1|A|A|574
5U9F|1|A|G|575
*
5U9F|1|A|C|880
5U9F|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17