3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUACAAAG*CAUAAAGU
Length
16 nucleotides
Bulged bases
5U9F|1|A|U|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5U9F|1|A|A|1246
5U9F|1|A|U|1247
5U9F|1|A|A|1248
5U9F|1|A|C|1249
5U9F|1|A|A|1250
5U9F|1|A|A|1251
5U9F|1|A|A|1252
5U9F|1|A|G|1253
*
5U9F|1|A|C|1284
5U9F|1|A|A|1285
5U9F|1|A|U|1286
5U9F|1|A|A|1287
5U9F|1|A|A|1288
5U9F|1|A|A|1289
5U9F|1|A|G|1290
5U9F|1|A|U|1291

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.23 s