IL_5U9F_168
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_168 not in the Motif Atlas
- Geometric match to IL_5MWI_002
- Geometric discrepancy: 0.1206
- The information below is about IL_5MWI_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5U9F|1|A|G|1405
5U9F|1|A|U|1406
5U9F|1|A|C|1407
*
5U9F|1|A|G|1494
5U9F|1|A|U|1495
5U9F|1|A|C|1496
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- Transfer RNA; tRNA
- Chain Y
- Alternative ribosome-rescue factor A
- Chain Z
- Peptide chain release factor RF2
Coloring options: