3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAC*GAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_169 not in the Motif Atlas
Geometric match to IL_2O3X_003
Geometric discrepancy: 0.2955
The information below is about IL_2O3X_003
Detailed Annotation
Decoding loop related
Broad Annotation
Decoding loop related
Motif group
IL_31737.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

5U9F|1|A|C|1407
5U9F|1|A|A|1408
5U9F|1|A|C|1409
*
5U9F|1|A|G|1491
5U9F|1|A|A|1492
5U9F|1|A|A|1493
5U9F|1|A|G|1494

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain L
30S ribosomal protein S12
Chain Y
Alternative ribosome-rescue factor A
Chain Z
Peptide chain release factor RF2

Coloring options:


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