IL_5U9F_170

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_170 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.2181

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5U9F|1|A|C|1412
5U9F|1|A|A|1413
5U9F|1|A|U|1414
5U9F|1|A|G|1415
*
5U9F|1|A|U|1485
5U9F|1|A|G|1486
5U9F|1|A|G|1487
5U9F|1|A|G|1488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain L

30S ribosomal protein S12

Chain Y

Alternative ribosome-rescue factor A