IL_5U9F_175
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAUUC*GUUAU
- Length
- 10 nucleotides
- Bulged bases
- 5U9F|1|01|U|846, 5U9F|1|01|U|931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_175 not in the Motif Atlas
- Geometric match to IL_5J7L_399
- Geometric discrepancy: 0.3506
- The information below is about IL_5J7L_399
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_96236.1
- Basepair signature
- cWW-tWW-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5U9F|1|01|A|844
5U9F|1|01|A|845
5U9F|1|01|U|846
5U9F|1|01|U|847
5U9F|1|01|C|848
*
5U9F|1|01|G|930
5U9F|1|01|U|931
5U9F|1|01|U|932
5U9F|1|01|A|933
5U9F|1|01|U|934
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 28
- 50S ribosomal protein L30
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