3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC
Length
35 nucleotides
Bulged bases
5U9F|1|01|U|2132, 5U9F|1|01|U|2155, 5U9F|1|01|U|2172, 5U9F|1|01|A|2173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5U9F|1|01|G|2124
5U9F|1|01|G|2125
5U9F|1|01|A|2126
5U9F|1|01|G|2127
5U9F|1|01|G|2128
5U9F|1|01|C|2129
5U9F|1|01|U|2130
5U9F|1|01|U|2131
5U9F|1|01|U|2132
5U9F|1|01|G|2133
5U9F|1|01|A|2134
5U9F|1|01|A|2135
5U9F|1|01|G|2136
5U9F|1|01|U|2137
*
5U9F|1|01|A|2154
5U9F|1|01|U|2155
5U9F|1|01|G|2156
5U9F|1|01|G|2157
5U9F|1|01|A|2158
5U9F|1|01|G|2159
5U9F|1|01|C|2160
5U9F|1|01|C|2161
5U9F|1|01|G|2162
5U9F|1|01|A|2163
5U9F|1|01|C|2164
5U9F|1|01|C|2165
5U9F|1|01|U|2166
5U9F|1|01|U|2167
5U9F|1|01|G|2168
5U9F|1|01|A|2169
5U9F|1|01|A|2170
5U9F|1|01|A|2171
5U9F|1|01|U|2172
5U9F|1|01|A|2173
5U9F|1|01|C|2174

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 03
50S ribosomal protein L1
Chain X
Transfer RNA; tRNA

Coloring options:

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